Yes — the EPUB table of contents maps to Markdown headings, so the document keeps its chapter structure and you can navigate or generate a contents list. Internal cross-references are preserved where Markdown supports them.
转换为 EPUB 后, Markdown 文本是否可编辑?
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Yes — that is the point of converting an ebook into a document. The Markdown is fully editable: fix typos, restyle, copy passages, or merge with other material in a normal word processor or text editor.